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  1. Loading coordinate files into VMD with the help of an AMBER topology file‏‎ (1 revision)
  2. Compiling and using OPTIM with QUIP‏‎ (1 revision)
  3. Automatic Rigid Body Grouping‏‎ (1 revision)
  4. Managing interactive jobs on cluster‏‎ (1 revision)
  5. If you need to change the number of atoms (e.g. making a united-atom charmm19 .crd file, or if atoms are missing)‏‎ (1 revision)
  6. Identifying the k fastest paths between endpoints using KSHORTESTPATHS‏‎ (1 revision)
  7. Path2pdb.py‏‎ (1 revision)
  8. Performing a hydrogen-bond analysis‏‎ (1 revision)
  9. Calculating order parameters‏‎ (1 revision)
  10. SuSE 11.1‏‎ (1 revision)
  11. Calculating rate constants (SGT, DGT, and SDGT)‏‎ (1 revision)
  12. Maui compilation‏‎ (1 revision)
  13. Torque and Maui‏‎ (1 revision)
  14. Expanding the kinetic transition network with PATHSAMPLE (CHARMM)‏‎ (1 revision)
  15. Debugging odd transition states in OPTIM‏‎ (1 revision)
  16. Progress‏‎ (1 revision)
  17. Fine tuning UNTRAP‏‎ (1 revision)
  18. Local rigid body in OPTIM‏‎ (1 revision)
  19. Installing python modules‏‎ (1 revision)
  20. Biomolecules in PATHSAMPLE‏‎ (1 revision)
  21. Ligand binding-mode searches with HBONDMATRIX‏‎ (1 revision)
  22. Differences from Clust‏‎ (1 revision)
  23. GMIN TESTS module‏‎ (1 revision)
  24. PYGMIN & DMACRYS‏‎ (1 revision)
  25. Upgrading destiny‏‎ (1 revision)
  26. Recommended bash aliases‏‎ (1 revision)
  27. Transfering files to and from your workstation‏‎ (1 revision)
  28. Pgprof‏‎ (1 revision)
  29. Printing files from the command line using 'lpr'‏‎ (1 revision)
  30. Installing GROMACS on Clust‏‎ (1 revision)
  31. Computing normal modes in angle-axis‏‎ (1 revision)
  32. Rotamer moves in AMBER‏‎ (1 revision)
  33. Jenkins CI‏‎ (1 revision)
  34. See unpacked nodes‏‎ (1 revision)
  35. CamCASP/Bugs‏‎ (1 revision)
  36. Xmgrace‏‎ (1 revision)
  37. Ellipsoid.model‏‎ (1 revision)
  38. Expanding the kinetic transition network with PATHSAMPLE‏‎ (1 revision)
  39. Adding several minima obtained using GMIN (maybe using BHPT) to min.data‏‎ (1 revision)
  40. Density of states and thermodynamics from energy distributions at different temperatures‏‎ (1 revision)
  41. Proposed changes to backup and archiving‏‎ (1 revision)
  42. Calculating molecular properties‏‎ (1 revision)
  43. Using GMIN and OPTIM with GPUs‏‎ (1 revision)
  44. A guide to using SLURM to run GPU jobs on pat‏‎ (1 revision)
  45. Compiler Flags‏‎ (1 revision)
  46. Rigid body input files for proteins using genrigid-input.py‏‎ (1 revision)
  47. Installing packages on your managed CUC3 workstation‏‎ (1 revision)
  48. Path.info file is not read, causes PATHSAMPLE to die‏‎ (1 revision)
  49. Gnuplot‏‎ (1 revision)
  50. Amberinterface‏‎ (1 revision)

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