Difference between revisions of "AMBER"
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== Tutorials == |
== Tutorials == |
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| − | * [[Preparing an AMBER topology file for a protein |
+ | * [[Preparing an AMBER topology file for a protein plus ligand system]] - step by step |
Revision as of 15:15, 12 May 2008
"AMBER" refers to two things: a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs); and a package of molecular simulation programs which includes source code and demos. In our case, mainly use the MM forcefields interfaced with other group software i.e. GMIN or OPTIM.