Difference between revisions of "VMD"
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| + | VMD is a molecular visualization program installed on all workstations and clusters. The official documentation can be found [http://www.ks.uiuc.edu/Research/vmd/current/ug/ug.html here] with some tutorials [http://www.ks.uiuc.edu/Training/Tutorials/vmd/tutorial-html/index.html here]. Like gnuplot however, the wealth of options means that often it takes a long time to find the one command you need to use so below you will find some useful basic settings/info for using VMD. |
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| − | VMD is a molecular visualization program installed on all workstations and clusters. |
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| + | == Tutorials == |
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| + | * [[using VMD to display and manipulate '.pdb' files]] |
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| + | * [[loading coordinate files into VMD with the help of an AMBER topology file]] e.g. to visualise the results of a GMIN run using AMBER9 |
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| + | * making moves from a [.pdb] file containing multiple structures. This is dealt with in the OPTIM section as part of the tutorial on making a movie of a path. |
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Revision as of 12:47, 29 April 2008
VMD is a molecular visualization program installed on all workstations and clusters. The official documentation can be found here with some tutorials here. Like gnuplot however, the wealth of options means that often it takes a long time to find the one command you need to use so below you will find some useful basic settings/info for using VMD.
Tutorials
- using VMD to display and manipulate '.pdb' files
- loading coordinate files into VMD with the help of an AMBER topology file e.g. to visualise the results of a GMIN run using AMBER9
- making moves from a [.pdb] file containing multiple structures. This is dealt with in the OPTIM section as part of the tutorial on making a movie of a path.