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  1. The effect of calculating less than the maximum number of eigenvalues using ENDHESS n‏‎ (15:04, 14 March 2011)
  2. Performing a normal mode analysis of a biomolecule using OPTIM (AMBER and CHARMM)‏‎ (15:12, 14 March 2011)
  3. Debugging odd transition states in OPTIM‏‎ (15:47, 14 March 2011)
  4. Expanding the kinetic transition network with PATHSAMPLE‏‎ (15:51, 14 March 2011)
  5. Minimizing a structure using OPTIM and AMBER9‏‎ (16:07, 14 March 2011)
  6. List of output files for PATHSAMPLE‏‎ (17:46, 14 March 2011)
  7. Calculating rate constants (GT and fastest path)‏‎ (17:50, 14 March 2011)
  8. Removing minima and transition states from the database‏‎ (17:59, 17 March 2011)
  9. Finding an initial path with OPTIM and starting up PATHSAMPLE‏‎ (13:50, 6 May 2011)
  10. Using GMIN to generate endpoints‏‎ (16:19, 24 May 2011)
  11. Loading OPTIM's min.data.info files into PATHSAMPLE‏‎ (15:28, 26 May 2011)
  12. Setting up‏‎ (12:25, 29 June 2011)
  13. Pathsampling short paths‏‎ (18:34, 9 September 2011)
  14. Optimising a path‏‎ (18:38, 9 September 2011)
  15. Connecting two minima with a pathway‏‎ (18:52, 7 February 2012)
  16. Setting up (CHARMM)‏‎ (15:52, 8 February 2012)
  17. Using GMIN to generate endpoints (CHARMM)‏‎ (15:54, 8 February 2012)
  18. Expanding the kinetic transition network with PATHSAMPLE (CHARMM)‏‎ (18:11, 4 February 2013)
  19. Pathsampling short paths (CHARMM)‏‎ (18:15, 4 February 2013)
  20. Minimizing a structure using OPTIM and CHARMM‏‎ (18:38, 4 February 2013)

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