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  1. Compiling Wales Group code using CMake
  2. Compiling Wales Group codes using cmake
  3. Compiling and using GMIN with QUIP
  4. Compiling and using OPTIM with QUIP
  5. Comprehensive Contents Page
  6. Computer Office services
  7. Computing CHARMM FF energy using GMIN, MMTSB and CHARMM
  8. Computing normal modes in angle-axis
  9. Computing values only once
  10. Connecting Sub-databases
  11. Connecting two minima with a pathway
  12. Constructing Free Energy Disconnectivity Graphs
  13. Conversion between different data file formats
  14. Conversion between different image file formats
  15. Converting between '.crd' and '.pdb'
  16. Creating mismatched DNA duplex using NAB
  17. Creating movies (.mpg) of paths using OPTIM
  18. DISCOTRESS
  19. DMACRYS interface
  20. DMAGMIN setup
  21. David's .inputrc file
  22. Debugging odd transition states in OPTIM
  23. Decoding heat capacity curves
  24. Density of states and thermodynamics from energy distributions at different temperatures
  25. Differences from Clust
  26. Dijkstra test.py
  27. DisconnectionDPS
  28. ElaborateDiff
  29. Ellipsoid.model
  30. Ellipsoid.model.xyz
  31. Ellipsoid.xyz
  32. Evaluating different components of AMBER energy function with SANDER
  33. Expanding the kinetic transition network with PATHSAMPLE
  34. Expanding the kinetic transition network with PATHSAMPLE (CHARMM)
  35. Extractedmin2pdb.py
  36. Finding an initial path between two end points (minima)
  37. Finding an initial path with OPTIM and starting up PATHSAMPLE
  38. Finding an initial path with OPTIM and starting up PATHSAMPLE (CHARMM)
  39. Finding bugs in latex documents that will not compile
  40. Fine tuning UNTRAP
  41. Fixing thunderbird links
  42. GMIN
  43. GMIN MOVES module
  44. GMIN SANITY module
  45. GMIN TESTS module
  46. GenCoords
  47. GenCoords Models
  48. Gencoords
  49. Generating a GMIN Eclipse project
  50. Generating parameters using AMBER's built in General Forcefield (gaff)

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