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Showing below up to 50 results in range #101 to #150.
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- Simple scripts for LEaP to create topology and coordinate files (09:25, 13 May 2019)
- Using Molfacture to edit molecules and add hydrogens (09:26, 13 May 2019)
- Preparing an AMBER topology file for a protein plus ligand system (09:27, 13 May 2019)
- Producing a PDB from a coordinates and topology file (09:29, 13 May 2019)
- Running GMIN with MD move steps AMBER (09:29, 13 May 2019)
- Evaluating different components of AMBER energy function with SANDER (09:30, 13 May 2019)
- REMD with AMBER (09:30, 13 May 2019)
- Performing a hydrogen-bond analysis (09:31, 13 May 2019)
- Perm-prmtop.py (09:31, 13 May 2019)
- Aux2bib (09:32, 13 May 2019)
- CamCasp (09:32, 13 May 2019)
- CamCASP/Programming (10:27, 13 May 2019)
- CamCASP/Programming/5/example1 (10:28, 13 May 2019)
- CamCASP/Notes (10:28, 13 May 2019)
- CamCASP/Bugs (10:29, 13 May 2019)
- CamCASP/ToDo/diskIO (10:29, 13 May 2019)
- CamCASP/ToDo/Memory (10:30, 13 May 2019)
- CamCASP/CodeExamples/DirectAccess (10:30, 13 May 2019)
- CPMDInput (10:30, 13 May 2019)
- Generating pdb, crd and psf for a peptide sequence (10:31, 13 May 2019)
- Converting between '.crd' and '.pdb' (10:32, 13 May 2019)
- Calculating energy of a conformation (10:32, 13 May 2019)
- Calculating molecular properties (10:33, 13 May 2019)
- Calculating order parameters (10:33, 13 May 2019)
- If you need to change the number of atoms (e.g. making a united-atom charmm19 .crd file, or if atoms are missing) (10:34, 13 May 2019)
- Constructing Free Energy Disconnectivity Graphs (10:35, 13 May 2019)
- DMACRYS interface (10:35, 13 May 2019)
- Gnuplot (10:36, 13 May 2019)
- Plotting a quick histogram in gnuplot using the raw data (10:37, 13 May 2019)
- Plotting data in real time (10:37, 13 May 2019)
- Linear and non-linear regression in gnuplot (10:38, 13 May 2019)
- Installing GROMACS on Clust (10:38, 13 May 2019)
- Latex2html (10:39, 13 May 2019)
- MMTSB-toolset (10:40, 13 May 2019)
- Installing and setting up the MMTSB toolset (10:52, 13 May 2019)
- REX (Replica EXchange MD) with the MMTSB-toolset (10:53, 13 May 2019)
- Simulations using OPEP (10:53, 13 May 2019)
- Pgprof (10:54, 13 May 2019)
- Portland compiler fails trying to allocate an unexpectedly large amount of memory: issue with large arrays (10:54, 13 May 2019)
- Pymol (10:55, 13 May 2019)
- Loading AMBER prmtop and inpcrd files into Pymol (10:55, 13 May 2019)
- Producing sexy ray-traced images (10:56, 13 May 2019)
- Advanced colouring (10:57, 13 May 2019)
- Path2pdb.py (10:58, 13 May 2019)
- Extractedmin2pdb.py (10:58, 13 May 2019)
- Using VMD to display and manipulate '.pdb' files (10:59, 13 May 2019)
- Loading coordinate files into VMD with the help of an AMBER topology file (11:00, 13 May 2019)
- Path2xyz.py (11:07, 13 May 2019)
- Useful .vmdrc file (11:08, 13 May 2019)
- PlotGMINms.tcl (11:08, 13 May 2019)