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Showing below up to 50 results in range #101 to #150.

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  1. Simple scripts for LEaP to create topology and coordinate files‏‎ (09:25, 13 May 2019)
  2. Using Molfacture to edit molecules and add hydrogens‏‎ (09:26, 13 May 2019)
  3. Preparing an AMBER topology file for a protein plus ligand system‏‎ (09:27, 13 May 2019)
  4. Producing a PDB from a coordinates and topology file‏‎ (09:29, 13 May 2019)
  5. Running GMIN with MD move steps AMBER‏‎ (09:29, 13 May 2019)
  6. Evaluating different components of AMBER energy function with SANDER‏‎ (09:30, 13 May 2019)
  7. REMD with AMBER‏‎ (09:30, 13 May 2019)
  8. Performing a hydrogen-bond analysis‏‎ (09:31, 13 May 2019)
  9. Perm-prmtop.py‏‎ (09:31, 13 May 2019)
  10. Aux2bib‏‎ (09:32, 13 May 2019)
  11. CamCasp‏‎ (09:32, 13 May 2019)
  12. CamCASP/Programming‏‎ (10:27, 13 May 2019)
  13. CamCASP/Programming/5/example1‏‎ (10:28, 13 May 2019)
  14. CamCASP/Notes‏‎ (10:28, 13 May 2019)
  15. CamCASP/Bugs‏‎ (10:29, 13 May 2019)
  16. CamCASP/ToDo/diskIO‏‎ (10:29, 13 May 2019)
  17. CamCASP/ToDo/Memory‏‎ (10:30, 13 May 2019)
  18. CamCASP/CodeExamples/DirectAccess‏‎ (10:30, 13 May 2019)
  19. CPMDInput‏‎ (10:30, 13 May 2019)
  20. Generating pdb, crd and psf for a peptide sequence‏‎ (10:31, 13 May 2019)
  21. Converting between '.crd' and '.pdb'‏‎ (10:32, 13 May 2019)
  22. Calculating energy of a conformation‏‎ (10:32, 13 May 2019)
  23. Calculating molecular properties‏‎ (10:33, 13 May 2019)
  24. Calculating order parameters‏‎ (10:33, 13 May 2019)
  25. If you need to change the number of atoms (e.g. making a united-atom charmm19 .crd file, or if atoms are missing)‏‎ (10:34, 13 May 2019)
  26. Constructing Free Energy Disconnectivity Graphs‏‎ (10:35, 13 May 2019)
  27. DMACRYS interface‏‎ (10:35, 13 May 2019)
  28. Gnuplot‏‎ (10:36, 13 May 2019)
  29. Plotting a quick histogram in gnuplot using the raw data‏‎ (10:37, 13 May 2019)
  30. Plotting data in real time‏‎ (10:37, 13 May 2019)
  31. Linear and non-linear regression in gnuplot‏‎ (10:38, 13 May 2019)
  32. Installing GROMACS on Clust‏‎ (10:38, 13 May 2019)
  33. Latex2html‏‎ (10:39, 13 May 2019)
  34. MMTSB-toolset‏‎ (10:40, 13 May 2019)
  35. Installing and setting up the MMTSB toolset‏‎ (10:52, 13 May 2019)
  36. REX (Replica EXchange MD) with the MMTSB-toolset‏‎ (10:53, 13 May 2019)
  37. Simulations using OPEP‏‎ (10:53, 13 May 2019)
  38. Pgprof‏‎ (10:54, 13 May 2019)
  39. Portland compiler fails trying to allocate an unexpectedly large amount of memory: issue with large arrays‏‎ (10:54, 13 May 2019)
  40. Pymol‏‎ (10:55, 13 May 2019)
  41. Loading AMBER prmtop and inpcrd files into Pymol‏‎ (10:55, 13 May 2019)
  42. Producing sexy ray-traced images‏‎ (10:56, 13 May 2019)
  43. Advanced colouring‏‎ (10:57, 13 May 2019)
  44. Path2pdb.py‏‎ (10:58, 13 May 2019)
  45. Extractedmin2pdb.py‏‎ (10:58, 13 May 2019)
  46. Using VMD to display and manipulate '.pdb' files‏‎ (10:59, 13 May 2019)
  47. Loading coordinate files into VMD with the help of an AMBER topology file‏‎ (11:00, 13 May 2019)
  48. Path2xyz.py‏‎ (11:07, 13 May 2019)
  49. Useful .vmdrc file‏‎ (11:08, 13 May 2019)
  50. PlotGMINms.tcl‏‎ (11:08, 13 May 2019)

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