Adk44: Created page with "This program creates a ''perm.allow'' file from a pdb. The script is located here or in the svn repository under SCRIPTS/make_perm.allow/ . It is used..."

2019-05-10T17:25:04Z

Created page with "This program creates a ''perm.allow'' file from a pdb. The script is located here or in the svn repository under SCRIPTS/make_perm.allow/ . It is used..."

New page

This program creates a ''perm.allow'' file from a pdb. The script is located [[Media:Perm-pdb.txt | here]] or in the svn repository under SCRIPTS/make_perm.allow/ . It is used as follows:

<pre>
~/svn/SCRIPTS/make_perm.allow/perm-pdb.py <NAME-PDB-FILE> [CHARMM|AMBER]
</pre>

Ensure that all residue names are as expected in the [[AMBER]] libraries, i.e. the terminal residues should be named correctly. Ensure that the PDB file contains END at the end of the sequence.

Perm-pdb.py - Revision history

Adk44: Created page with "This program creates a ''perm.allow'' file from a pdb. The script is located here or in the svn repository under SCRIPTS/make_perm.allow/ . It is used..."