Difference between revisions of "Generating parameters using AMBER's built in General Forcefield (gaff)"
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− | If system contains residue(s) or ligand(s) which is not parametrized in AMBER libraries and there is no force field parameters for it, you need to calculate them :) |
+ | If system contains residue(s) or ligand(s) which is not parametrized in [[AMBER]] libraries and there is no force field parameters for it, you need to calculate them :) |
[http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_five/create_prmtop.htm Here] you can find very useful tutorial written by Ross Walker how to create topology and coordinate files for the drug Sustiva (efavirenz). |
[http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_five/create_prmtop.htm Here] you can find very useful tutorial written by Ross Walker how to create topology and coordinate files for the drug Sustiva (efavirenz). |
Latest revision as of 19:47, 12 May 2008
If system contains residue(s) or ligand(s) which is not parametrized in AMBER libraries and there is no force field parameters for it, you need to calculate them :)
Here you can find very useful tutorial written by Ross Walker how to create topology and coordinate files for the drug Sustiva (efavirenz).