AMBER

"AMBER" refers to two things: a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs); and a package of molecular simulation programs which includes source code and demos. In our case, mainly use the MM forcefields interfaced with other group software i.e. GMIN or OPTIM.

Tutorials

• Preparing an AMBER topology file for a protein + ligand system - step by step