OPTIM

A program for optimizing geometries and calculating reaction pathways. The OPTIM homepage is located here.

Tutorials

These tutorials are under development. Please correct any mistakes you find and, of course, feel free to add more!

• Adding a model to OPTIM
• OPTIM output files
• Minimizing a structure using OPTIM and AMBER9
• Creating movies (.mpg) of paths using OPTIM
• Performing a normal mode analysis of a biomolecule using OPTIM (AMBER and CHARMM)
• Debugging odd transition states in OPTIM