Difference between revisions of "Conversion between different data file formats"
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import>Em427 |
import>Em427 |
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| Line 13: | Line 13: | ||
pdb -> crd |
pdb -> crd |
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| − | awk '{if ($1!="TER" && $1!="END") printf"%5d%5d%4s %-4s%17.12f%17.12f%17.12f%6s %-4d\n", $2, |
+ | awk '{if ($1!="TER" && $1!="END") printf"%5d%5d%4s %-4s%17.12f%17.12f%17.12f%6s %-4d\n", $2,$5,$4,$3,$6,$7,$8,"NAME",$5}' input.pdb > tmp1 |
wc -l tmp1 | awk '{print $1}'> tmp2 |
wc -l tmp1 | awk '{print $1}'> tmp2 |
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cat tmp1 tmp2 > input.crd |
cat tmp1 tmp2 > input.crd |
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Revision as of 14:07, 30 April 2008
xyz -> inpcrd
awk '{printf("%.7f %.7f %.7f "), $1, $2, $3} {getline} {printf("%.7f %.7f %.7f\n"), $1, $2, $3}' input.xyz > input.inpcrd
crd -> pdb
tail +2 input.crd > input.crd_nohead
awk '{printf"%4s%7d %-4s %4s%5d%12.3f%8.3f%8.3f\n", "ATOM",$1,$4,$3,$2,$5,$6,$7}' input.crd_nohead > input.pdb
rm input.crd_nohead
pdb -> crd
awk '{if ($1!="TER" && $1!="END") printf"%5d%5d%4s %-4s%17.12f%17.12f%17.12f%6s %-4d\n", $2,$5,$4,$3,$6,$7,$8,"NAME",$5}' input.pdb > tmp1
wc -l tmp1 | awk '{print $1}'> tmp2
cat tmp1 tmp2 > input.crd
rm tmp1 tmp2