Difference between revisions of "Talk:Useful PBS scripts"

Revision as of 17:29, 12 March 2008

1. PBS -q s32

1. PBS -l walltime=18:00:00

1. PBS -l nodes=8:ppn=4

HERE=/home/mm695/whatever

file=dho2498_singlePoint

inpfile=${file}.inp

outfile=${file}.out

SCRATCH=/scratch/mm695/$file

nodes=`cat $PBS_NODEFILE | uniq`

for node in $nodes

do
  rsh $node "rm -f $SCRATCH/*"
  rsh $node "rmdir $SCRATCH"
  rsh $node "mkdir $SCRATCH"
  rsh $node "cp ${HERE}/gromos*   $SCRATCH"
  rsh $node "cp ${HERE}/geom_end_of_sim.crd   $SCRATCH"
  rsh $node "cp ${HERE}/RESTART   $SCRATCH"
  rsh $node "cp ${HERE}/${inpfile}  $SCRATCH"
done

exe=/home/mm695/SOURCE/cpmd.x

pp=/home/mm695/pseudopot

cd $SCRATCH

1. Write out some helpful info to the output file

echo "Starting job $PBS_JOBID" echo echo "PBS assigned me this node:" cat $PBS_NODEFILE echo

mvapichwrapper $exe $inpfile $pp > ${HERE}/${outfile}

for node in $nodes

do
  rsh $node 'mv ${SCRATCH}/* ${HERE}'
  rsh $node 'rm -f ${SCRATCH}/*'       
  rsh $node 'rmdir /scratch/mm695/$file'
done

qstat -f $PBS_JOBID

Difference between revisions of "Talk:Useful PBS scripts"

Revision as of 17:29, 12 March 2008

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@@ Line 1: / Line 1: @@
-#PBS -q s32
+##PBS -q s32
-#PBS -l walltime=18:00:00
-#PBS -l nodes=8:ppn=4
+##PBS -l walltime=18:00:00
+##PBS -l nodes=8:ppn=4
 HERE=/home/mm695/whatever
 file=dho2498_singlePoint
 inpfile=${file}.inp
 outfile=${file}.out
 SCRATCH=/scratch/mm695/$file
 nodes=`cat $PBS_NODEFILE | uniq`
 for node in $nodes
  do
@@ Line 21: / Line 29: @@
 exe=/home/mm695/SOURCE/cpmd.x
 pp=/home/mm695/pseudopot
 cd $SCRATCH
-ls -la
 #
-# Write out some helpful info to the output file
+## Write out some helpful info to the output file
 #
 echo "Starting job $PBS_JOBID"
@@ Line 43: / Line 52: @@
  done
-echo
-echo
 qstat -f $PBS_JOBID