Revision as of 15:25, 13 May 2008 by import>Csw34
This program creates a perm.allow file from a pdb. The script is located here. It is used as follows:
chmod 755 perm-pdb.py
./perm-pdb.py <NAME-PDB-FILE>
Ensure that all residue names are as expected in the AMBER libraries i.e. the terminal residues should be named correctly.